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-PrimerDesign: The primer design tool was modified to provide you some novel features.
-PrimerCount: To count the primer sequences
-PrimerDesignPlot: To draw a graph of primer sequences.
-SequenceStatistics: To get information of primers in transcriptome sequences.
-DefaultOutDelF: To code INDELing.
-DefaultOutDelR: To code substitution editing.
-DefaultOutDelR2: To code forward substitution editing.
-DefaultOutDelR1: To code reverse substitution editing.
-CalculateOrientation: To calculate primer orientations with INDELs.
-CalculateIndelLocus: To find the INDEL loci from the output results.
-CalculateOrientationPlot: To draw the graph of primer orientation with INDELs.
-SequenceStatisticsPlot: To draw the graph of primer sequences in transcriptome sequences.
-IndelLocus: To find the INDELs from the output results.
-IndelOrthoSequences: To determine INDEL orthologous sequences.
-SequenceStatisticsPlot2: To draw the graph of sequence statistics with INDELs and substitutions.
-SequenceStatisticsPlot3: To draw the graph of sequence statistics with INDELs and forward and reverse substitutions.
-IndelFASTA: To generate INDELs as FASTA sequences.
-SequenceStatisticsPlot4: To draw the graph of sequence statistics with INDELs and forward and reverse substitutions and INDELs.
-IndelOrthoSequences: To determine INDEL orthologous sequences.
-SequenceStatisticsPlot4: To draw the graph of sequence statistics with INDELs, substitutions and INDELs.
-IndelFASTA: To generate INDELs as FASTA sequences.
-SequenceStatisticsPlot5: To draw the graph of sequence statistics with INDELs and forward and reverse substitutions and INDELs and forward substitutions.
-CheckIndelLength: To check the length of INDELs with various schemes.
-CheckIndelOffset: To check the offset of INDELs with various schemes.
-CheckIndelCodon: To check the codon of INDELs with various schemes.
-CheckIndelPosition: To check the position of INDELs with various schemes.
-CheckInd 84e02134c1

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KeyMacro stands for Key Mashing algorithm. It is an method of generating a parser for a natural language grammar. This method was proposed by J. F. Messina in 1987. As it was pointed out, it can give a parser in a good time with a small space of data by creating a permutation of grammatical words and their order. This method is very similar to the GLR(1) method except the fact that it does not have the backtracking restriction. The permutation is performed on the grammatical words of an input stream and it is the only restriction that distinguishes this method from the GLR(1) method. It is also possible to combine this method with the backtracking methods.
1- Initialization of KeyMacro:
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1) Initializing the KeyMacro is only done when the program starts up. This step should be done in the main method. There should be an integer variable called GrammarKey macro. In this variable, the number of states the generated grammar is assigned. Also, in this variable, a parser generator should be assigned.
2) Initialize a one-dimension array of the shape 10 to store the permutations of the grammatical words. This array should be assigned to the GrammarKey macro and it should be initialized with all zeroes (0).
3) Determine the size of the input data that will be parsed, using the maxvalue method.
4) Initialize a one-dimension array of the shape maxvalue with all zeroes (0).
5) Determine the shape of the next token that will be parsed. This step is taken by the token shape method.
6) Initialize a dictionary (parsing key) and array (next token) that will be used for the parsing. There should be two methods for storing this data; one for the dictionary and one for the array.
7) Initialize the parser. This step is taken by the initialize method.
METHOD Description:
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The method used in each parsing is taken and it is added into the grammar, with suitable methods for the shape of the data, the parsing key and the next token. The method is called KeyMacro for a simple reason. It is created because of this name. A more detailed description of this method is given below.
1- KeyMacro:
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After the parsing key, the method KeyMacro is added to the grammar. This

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